PaDEL-APC3

Description

A RapidMiner plugin for a fully automated and computationally efficient Pearson's correlation change classification approach for GC/MS metabonomic data.

PaDEL-APC3 was based on the idea correlation based feature selection. For more information on the APC3 algorithm, please refer to the paper "Prakash BD, Esuvaranathan K, Ho PC, Pasikanti KK, Chan ECY and Yap CW (2012). An automated Pearson's correlation change classification (APC3) approach for GC/MS metabonomic data using total ion chromatograms (TIC). Analyst.".


Installation

  1. Download PaDEL-APC3.zip
  2. Extract the PaDEL-APC3.jar to the RapidMiner's lib/plugins folder.

Tutorial

  1. Download PaDEL-APC3_sample.zip
  2. Extract the files to any folder.
  3. In RapidMiner, use "Import Process" to import the file PaDEL-APC3.xml.

Licence

This software is free for all (e.g. personal, academic, non-profit, non-commercial, government, commercial, etc) to use.



Citation

Prakash BD, Esuvaranathan K, Ho CL, Pasikanti KK, Chan ECY and Yap CW (2013). An automated pearson's correlation change classification (APC3) approach for GC/MS metabonomic data using total ion chromatograms (TIC). Analyst. 138 (10): 2883-2889.


History

  1. Version 1.0 [01 Nov 2012]: First release.

Last modified on 14 May, 2013 by Yap Chun Wei